Colonization history of Galapagos giant tortoises: Insights from mitogenomes support the progression rule

Galapagos giant tortoises (Chelonoidis spp.) are a group of large, long-lived reptiles that includes 14 species, 11 of which are extant and threatened by human activities and introductions of non-native species. Here, we evaluated the phylogenetic relationships of all extant and two extinct species (Chelonoidis abingdonii from the island of Pinta and Chelonoidis niger from the island of Floreana) using Bayesian and maximum likelihood analysis of complete or nearly complete mitochondrial genomes. We also provide an updated phylogeographic scenario of their colonization of the Galapagos Islands using chrono-phylogenetic and biogeographic approaches. The resulting phylogenetic trees show three major groups of species: one from the southern, central, and western Galapagos Islands; the second from the northwestern islands; and the third group from the northern, central, and eastern Galapagos Islands. The time-calibrated phylogenetic and ancestral area reconstructions generally align with the geologic ages of the islands. The divergence of the Galapagos giant tortoises from their South American ancestor likely occurred in the upper Miocene. Their diversification on the Galapagos adheres to the island progression rule, starting in the Pleistocene with the dispersal of the ancestral form from the two oldest islands (San Cristóbal and Española) to Santa Cruz, Santiago, and Pinta, followed by multiple colonizations from different sources within the archipelago. Our work provides an example of how to reconstruct the history of endangered taxa in spite of extinctions and human-mediated dispersal events and provides a framework for evaluating the contribution of colonization and in situ speciation to the diversity of other Galapagos lineages.     

Vegetation Zonation in a Neotropical Montane Forest: Environment,Disturbance and Ecotones

Gradual changes in vegetation structure and composition are expected to result from continuous environmental change with increasing elevation on mountains. Hence, the occurrence of abrupt or discrete ecotones in vegetation patterns is intriguing and may suggest key controls on community assembly in montane forests. We review tropical montane forest (TMF) zonation patterns focusing on a case study from the Cordillera Central, Hispaniola where a striking discontinuity in forest composition occurs consistently at ～2000 m elevation, with cloud forest below and monodominant pine forest above. We propose that a discontinuity in climatic factors (temperature, humidity) associated with the trade‐wind inversion (TWI) is the primary cause of this and other ecotones in TMFs that occur at a generally consistent elevation. Low humidity, fires and occasional frost above the TWI favor pine over cloud forest species. Fires in the high‐elevation pine forest have repeatedly burned down to the ecotone boundary and extinguished in the cloud forest owing to its low flammability, reinforced by high humidity, cloud immersion and epiphytic bryophyte cover. Small‐scale fire patterns along the ecotone are influenced by topography and where forest structure is impacted by hurricanes and landslides. Analogous patterns are observed worldwide in other TMFs where the TWI is important, high‐elevation fires are frequent, and the flora contains frost‐tolerant species (often of temperate lineage). The response of this and other TMFs to anthropogenic climate change is highly uncertain owing to potentially countervailing effects of different climatic phenomena, including warming temperatures and decreased frost; changes in the TWI, high‐elevation drought or cloudiness; and increased frequency or intensity of hurricanes and El Niño‐Southern Oscillation events.     

“海棠”台风气流场对褐飞虱北迁路径的影响

基于GIS、GrADS软件和HYSPLIT 4.8轨迹模式,分析了0505号台风“海棠”发生期间（2005年7月19—21日）中国10个省42个虫情观测点的逐日灯诱褐飞虱虫量、850 hPa等压面的风场和20个虫情监测点的褐飞虱迁飞轨迹.结果表明：台风“海棠”登陆中国后,改变了引导褐飞虱向北迁飞的西南气流,造成风场在台风西南部的辐合和大范围的转向,阻止了褐飞虱的向北迁飞,迫使其在某些区域集中迫降;850 hPa等压面上切变线附近是褐飞虱集中降落的区域;在台风衰亡时期,台风东南部气流暖式切变区是大量降虫的区域;台风整体登陆后,西南气流的再次建立,造成褐飞虱的大量北迁.     

Variation of broth composition by addition of broiler litter composting substrate extracts: influence on faecal bacterial growth

Aim:  This study investigates differences in bacterial growth response in broth amended with compost-substrate extracts periodically bypassed during broiler litter composting.
Methods and Results:  Compost samples, suspended in diluent were mixed with double strength broth into which ampicillin selective (0·3 g l⁻¹) Escherichia coli and E. faecalis were separately seeded. Growth was measured by viable cell count. The Levenberg–Marquardt algorithm was applied to obtain a four-parameter sigmoidal function that best described the diminishing height transitions of the curves for extracts of increasing composting age. The time course of the growth rate followed a unimodal bell-shaped curve. The Microfit^© application was run to generate information of direct microbiological interest: increasing λ and decreasing μ_max for both bacteria with time.
Conclusion:  More than the curve-fitting process, the Unified model option of the Microfit^© application has confirmed the significant differences ( P  <   0·05) in the growth curve behaviour with more stabilized substrate extracts. The study demonstrates further scopes for characterization of the sanitization potential and indirectly, the impact of indigenous microbial competitive exclusion effects on enteric bacteria.
Significance and Impact of the Study:  A different outlook to understanding faecal bacterial growth dynamics in compost has been presented, using predictive microbiology concepts. Further structured studies are needed to fine-tune the generality of the findings for model development.     

Intrinsic and extrinsic determinants of mountain pine beetle population growth

1 Mountain pine beetle Dendroctonus ponderosae populations have large, economically significant outbreaks. Density dependence and environmental variability are expected to have important effects on their dynamics. We analysed time series data from an outbreak in the 1930s to determine the relative importance of population density and environmental variability on local population growth rates.
2 Resource depletion occurred rapidly at the scale of 0.4 ha and population growth rates were strongly density dependent. Annual environmental changes did not have detectable effects on population growth rates, leading to the conclusion that intrinsic processes influenced local population density more than extrinsic factors during this outbreak.
3 Our calculated value of r _max (1.16) does not suggest intrinsically cyclic population dynamics. Our estimate of r _max and density dependence will be useful in developing applied models of mountain pine beetle outbreaks, and the subsequent evaluation of management strategies.     

The historical biogeography of the freshwater knifefishes using mitogenomic approaches: A Mesozoic origin of the Asian notopterids (Actinopterygii: Osteoglossomorpha)

The continental distributions of freshwater fishes in the family Notopteridae (Osteoglossomorpha) across Africa, India, and Southeast Asia constitute a long standing and enigmatic problem of freshwater biogeography. The migrational pathway of the Asian notopterids has been discussed in light of two competing schemes: the first posits recent transcontinental dispersal while the second relies on distributions being shaped by ancient vicariance associated with plate-tectonic events. In this study, we determined complete mitochondrial DNA sequences from 10 osteoglossomorph fishes to estimate phylogenetic relationships using partitioned Bayesian and maximum likelihood methods and divergence dates of the family Notopteridae with a partitioned Bayesian approach. We used six species representing the major lineages of the Notopteridae and seven species from the remaining osteoglossomorph families. Fourteen more-derived teleosts, nine basal actinopterygians, two coelacanths, and one shark were used as outgroups. Phylogenetic analyses indicated that the African and Asian notopterids formed a sister group to each other and that these notopterids were a sister to a clade comprising two African families (Mormyridae and Gymnarchidae). Estimated divergence time between the African and Asian notopterids dated back to the early Cretaceous when India–Madagascar separated from the African part of Gondwanaland. Thus, estimated time of divergence based on the molecular evidence is at odds with the recent dispersal model. It can be reconciled with the geological and paleontological evidence to support the vicariance model in which the Asian notopterids diverged from the African notopterids in Gondwanaland and migrated into Eurasia on the Indian subcontinent from the Cretaceous to the Tertiary. However, we could not exclude an alternative explanation that the African and Asian notopterids diverged in Pangea before its complete separation into Laurasia and Gondwanaland, to which these two lineages were later confined, respectively.     

Symmetric faces are a sign of successful cognitive aging

It has been proposed that a common cause underlies individual differences in bodily and cognitive decline in old age. No good marker for this common cause has been identified to date. Here, fluctuating asymmetry (FA), an indicator of developmental stability that relates to intelligence differences in young adults, was measured from facial photographs of 216 surviving members of the Lothian Birth Cohort 1921 at age 83 and related to their intelligence at ages 11, 79 and 83 years. FA at age 83 was unrelated to intelligence at ages 11 and 79 and to cognitive change between 11 and 79 years. It was, however, associated with intelligence and information processing efficiency at age 83 and with cognitive change between 79 and 83 years. Significant results were limited to men, a result predicted by sex differences in life history tradeoffs and life expectancy. Results were stronger when directional asymmetries were corrected in facial FA measures. Thus, FA is a candidate marker for the common cause of differential senescence.     

Linking Physiology To Ecological Function: Environmental Conditions Affect Performance And Size Of The Intertidal Kelp Hedophyllum Sessile (Laminariales,Phaeophyceae)

For autogenic ecosystem engineers, body size is an aspect of individual performance that has direct connections to community structure; yet the complex morphology of these species can make it difficult to draw clear connections between the environment and performance. We combined laboratory experiments and field surveys to test the hypothesis that individual body size was determined by disparate localized physiological responses to environmental conditions across the complex thallus of the intertidal kelp Hedophyllum sessile, a canopy‐forming physical ecosystem engineer. We documented substantial (> 40%) declines in whole‐thallus photosynthetic potential (as Maximum Quantum Yield, MQY) as a consequence of emersion, which were related to greater than 10‐fold increases in intra‐thallus MQY variability (as Coefficient of Variation). In laboratory experiments, desiccation and high light levels during emersion led to lasting impairment of photosynthetic potential and an immediate > 25% reduction in area due to tissue contraction, which was followed by complete loss of structural integrity after three days of submersion. Tissue exposed to desiccation and high light during emersion had higher nitrogen concentrations and lower phlorotannin concentrations than tissue in control treatments (on average 1.36 and 0.1x controls, respectively), suggesting that conditions during emersion have the potential to affect food quality for consumers. Our data indicate that the complex thallus morphology of H. sessile may be critical to this kelp’s ability to persist in the intertidal zone despite the physiological challenges of emersion and encourage a more nuanced view of the concept of “sub‐lethal stress” on the scale of the whole individual.     

Length–weight relationships of four fish species from Vembanad-Kole Wetland (Kerala,India)

The length–weight relationships (LWRs) of four fish species were determined from Vembanad-Kole Wetland, Kerala, India between June 2015 and May 2016. Fish samples were collected monthly from various fishing gears such as gill nets (50 m long and 1.5 m height, mesh sizes 30–100 mm, soaking time 8 hr) and seine nets (mesh sizes 8–16 mm). Values of the parameter b ranged from 2.896 to 3.165 and such values are within the expected range. This study reports the new maximum total length for Channa pseudomarulius and Hyporhamphus xanthopterus.     

Length weight relationships of five marine fishes from the Bay of Bengal

Length weight relationships (LWR) of five marine fishes were estimated from the Bay of Bengal, Bangladesh. Fish samples were collected occasionally from fisher's catch with gill net (mesh size: 3 cm) during November 2019 to October 2020. Fishing was done overnight. Total length (0.1 cm) and body weight (0.01 g) of each individual were measured. We recorded maximum total length for P. maculatus (55.0 cm) and P. parmatus (39.0 cm).